3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09260

Details:

PFam ID : PF09260

PFam Domain Description : Domain of unknown function (DUF1966)

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 128

Average sequence length: 85.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09260	Q7SDJ6_NEUCR_383_444	69.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09260	B6HIZ0_PENCW_421_517	100

Sequence based PCA Plot of the family - PF09260 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=63 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay