3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09258

Details:

PFam ID : PF09258

PFam Domain Description : Glycosyl transferase family 64 domain

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 166

Average sequence length: 222.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09258	C4Q9B9_SCHMA_756_994	82.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09258	Q4E293_TRYCR_70_263	100

Sequence based PCA Plot of the family - PF09258 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=72 Length=8
Motif2 Start=203 Length=8
Motif3 Start=19 Length=8
Motif4 Start=161 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay