3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09255

Details:

PFam ID : PF09255

PFam Domain Description : Caf1 Capsule antigen

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 4

Average sequence length: 74.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09255	T2F1_PLAOK_391_583	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09255	Q8KI11_YERPE_29_159	100

Sequence based PCA Plot of the family - PF09255 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay