3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09250

Details:

PFam ID : PF09250

PFam Domain Description : Bifunctional DNA primase/polymerase, N-terminal

Number of Sequence in 50% Dataset : 241

Number of Sequence in Full Dataset : 529

Average sequence length: 172.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09250	C7DHJ4_9EURY_171_292	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09250	C3F883_BACTU_19_176	98.8

Sequence based PCA Plot of the family - PF09250 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=123 Length=8
Motif3 Start=86 Length=8
Motif4 Start=54 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay