3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09249

Details:

PFam ID : PF09249

PFam Domain Description : tRNA nucleotidyltransferase, second domain

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 101

Average sequence length: 111.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09249	C7DHJ4_9EURY_171_292	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09249	C7DHJ4_9EURY_171_292	100

Sequence based PCA Plot of the family - PF09249 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=8
Motif2 Start=24 Length=17
Motif3 Start=84 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay