3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09248

Details:

PFam ID : PF09248

PFam Domain Description : Domain of unknown function (DUF1965)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 35

Average sequence length: 70.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09248	B2AKJ3_PODAN_238_307	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09248	E2LDM4_MONPE_182_254	100

Sequence based PCA Plot of the family - PF09248 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay