3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09243

Details:

PFam ID : PF09243

PFam Domain Description : Mitochondrial small ribosomal subunit Rsm22

Number of Sequence in 50% Dataset : 132

Number of Sequence in Full Dataset : 338

Average sequence length: 224.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09243	D8UKQ2_VOLCA_478_608	74.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09243	A4S254_OSTLU_128_269	100

Sequence based PCA Plot of the family - PF09243 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=173 Length=8
Motif2 Start=243 Length=8
Motif3 Start=230 Length=8
Motif4 Start=380 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay