3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09242

Details:

PFam ID : PF09242

PFam Domain Description : Flavocytochrome c sulphide dehydrogenase, flavin-binding

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 133

Average sequence length: 69.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09242	E1B8M7_BOVIN_127_214	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09242	D8JX77_HYPDA_356_430	100

Sequence based PCA Plot of the family - PF09242 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=17 Length=18
Motif2 Start=60 Length=11
Motif3 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay