3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09240

Details:

PFam ID : PF09240

PFam Domain Description : Interleukin-6 receptor alpha chain, binding

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 110

Average sequence length: 91.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09240	E1B8M7_BOVIN_127_214	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09240	Q6DD37_XENLA_117_216	99.0

Sequence based PCA Plot of the family - PF09240 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay