3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09239

Details:

PFam ID : PF09239

PFam Domain Description : Topoisomerase VI B subunit, transducer

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 111

Average sequence length: 155.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09239	D2R7E9_PIRSD_354_417	37.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09239	Q6MJB6_BDEBA_311_476	100

Sequence based PCA Plot of the family - PF09239 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=32 Length=14
Motif2 Start=14 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay