3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09238

Details:

PFam ID : PF09238

PFam Domain Description : Interleukin-4 receptor alpha chain, N-terminal

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 11

Average sequence length: 84.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09238	B2BJ88_DANRE_22_117	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09238	B2BJ88_DANRE_22_117	100

Sequence based PCA Plot of the family - PF09238 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=14 Length=27
Motif2 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay