3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09234

Details:

PFam ID : PF09234

PFam Domain Description : Domain of unknown function (DUF1963)

Number of Sequence in 50% Dataset : 179

Number of Sequence in Full Dataset : 273

Average sequence length: 202.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09234	C2S4X4_BACCE_43_95	88.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09234	A4EM76_9RHOB_181_263	100

Sequence based PCA Plot of the family - PF09234 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=75 Length=8
Motif2 Start=283 Length=8
Motif3 Start=55 Length=11
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay