3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09230

Details:

PFam ID : PF09230

PFam Domain Description : DNA fragmentation factor 40 kDa

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 33

Average sequence length: 232.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09230	E2BEW9_9HYME_1_84	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09230	D0AB91_9NEOP_98_350	100

Sequence based PCA Plot of the family - PF09230 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=132 Length=8
Motif2 Start=151 Length=8
Motif3 Start=40 Length=8
Motif4 Start=165 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay