3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09229

Details:

PFam ID : PF09229

PFam Domain Description : Activator of Hsp90 ATPase, N-terminal

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 239

Average sequence length: 135.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09229	A2AF81_MOUSE_29_70	91.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09229	D8LX89_BLAHO_71_154	100

Sequence based PCA Plot of the family - PF09229 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=48 Length=8
Motif2 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay