3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09223

Details:

PFam ID : PF09223

PFam Domain Description : YodA lipocalin-like domain

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 123

Average sequence length: 170.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09223	D7BNN5_ARCHD_53_234	81.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09223	B6FTN0_9CLOT_399_583	98.3

Sequence based PCA Plot of the family - PF09223 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=11
Motif2 Start=19 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay