3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09214

Details:

PFam ID : PF09214

PFam Domain Description : Bacteriophage Prd1, adsorption protein P2

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 3

Average sequence length: 371.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09214	D0U1J3_MHV68_22_397	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09214	Q3T516_BPPRD_2_556	100

Sequence based PCA Plot of the family - PF09214 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=271 Length=8
Motif2 Start=537 Length=8
Motif3 Start=250 Length=8
Motif4 Start=198 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay