3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09209

Details:

PFam ID : PF09209

PFam Domain Description : Domain of unknown function (DUF1956)

Number of Sequence in 50% Dataset : 109

Number of Sequence in Full Dataset : 197

Average sequence length: 121.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09209	B3E4S1_GEOLS_92_213	75.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09209	D5CQ06_SIDLE_108_236	100

Sequence based PCA Plot of the family - PF09209 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay