3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09206

Details:

PFam ID : PF09206

PFam Domain Description : Alpha-L-arabinofuranosidase B, catalytic

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 76

Average sequence length: 306.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09206	B5HUR3_9ACTO_1_91	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09206	F0YQZ2_9STRA_11_336	100

Sequence based PCA Plot of the family - PF09206 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=382 Length=8
Motif2 Start=393 Length=8
Motif3 Start=1 Length=17
Motif4 Start=237 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay