3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09203

Details:

PFam ID : PF09203

PFam Domain Description : MspA

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 81

Average sequence length: 177.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09203	Q5YVU3_NOCFA_32_237	83.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09203	E5XN94_9ACTO_52_250	98.7

Sequence based PCA Plot of the family - PF09203 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=196 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay