3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09199

Details:

PFam ID : PF09199

PFam Domain Description : Domain of unknown function (DUF1954)

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 42

Average sequence length: 78.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09199	B9DPF6_STACT_60_146	63.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09199	B9DPF6_STACT_60_146	100

Sequence based PCA Plot of the family - PF09199 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=25 Length=8
Motif3 Start=16 Length=8
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay