3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09190

Details:

PFam ID : PF09190

PFam Domain Description : DALR domain

Number of Sequence in 50% Dataset : 126

Number of Sequence in Full Dataset : 1275

Average sequence length: 64.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09190	B7A9C5_THEAQ_91_167	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09190	SYC_MYCGE_334_395	100

Sequence based PCA Plot of the family - PF09190 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=8
Motif2 Start=4 Length=17
Motif3 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay