3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09187

Details:

PFam ID : PF09187

PFam Domain Description : Domain of unknown function(DUF1950)

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 12

Average sequence length: 109.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09187	A7AUG9_BABBO_55_222	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09187	RDM1_ARATH_44_162	100

Sequence based PCA Plot of the family - PF09187 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay