3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09176

Details:

PFam ID : PF09176

PFam Domain Description : Methylene-tetrahydromethanopterin dehydrogenase, N-terminal

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 65

Average sequence length: 74.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09176	B3FR86_9GAMM_1_30	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09176	Q7AV35_METED_17_97	100

Sequence based PCA Plot of the family - PF09176 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=26 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay