3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09174

Details:

PFam ID : PF09174

PFam Domain Description : Maf1 regulator

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 155

Average sequence length: 160.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09174	B7XI80_ENTBH_6_155	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09174	F2QLB3_PICPA_24_255	100

Sequence based PCA Plot of the family - PF09174 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=249 Length=8
Motif2 Start=4 Length=8
Motif3 Start=194 Length=8
Motif4 Start=269 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay