3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09170

Details:

PFam ID : PF09170

PFam Domain Description : Domain of unknown function (DUF1879)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 18

Average sequence length: 147.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09170	C3YXB5_BRAFL_171_333	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09170	STN1_RAT_167_329	100

Sequence based PCA Plot of the family - PF09170 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=19 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay