3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09169

Details:

PFam ID : PF09169

PFam Domain Description : BRCA2, helical

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 53

Average sequence length: 129.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09169	A2ERV5_TRIVA_884_967	95.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09169	B0X0D2_CULQU_928_1142	100

Sequence based PCA Plot of the family - PF09169 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=73 Length=8
Motif4 Start=33 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay