3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09164

Details:

PFam ID : PF09164

PFam Domain Description : Vitamin D binding protein, domain III

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 11

Average sequence length: 61.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09164	F1NVF3_CHICK_407_474	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09164	F1NVF3_CHICK_407_474	100

Sequence based PCA Plot of the family - PF09164 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay