3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09163

Details:

PFam ID : PF09163

PFam Domain Description : Formate dehydrogenase N, transmembrane

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 109

Average sequence length: 43.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09163	D3SLG3_THEAH_250_293	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09163	D3SLG3_THEAH_250_293	96.2

Sequence based PCA Plot of the family - PF09163 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=8
Motif2 Start=1 Length=8
Motif3 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay