3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09162

Details:

PFam ID : PF09162

PFam Domain Description : Tap, RNA-binding

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 60

Average sequence length: 83.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09162	F1QI56_DANRE_1_63	53.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09162	E0VI83_PEDHC_93_181	100

Sequence based PCA Plot of the family - PF09162 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=11
Motif2 Start=22 Length=8
Motif3 Start=1 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay