3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09154

Details:

PFam ID : PF09154

PFam Domain Description : Domain of unknown function (DUF1939)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 95

Average sequence length: 57.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09154	E3DMN2_HALPG_411_472	69.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09154	E3DMN2_HALPG_411_472	98.9

Sequence based PCA Plot of the family - PF09154 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=26 Length=8
Motif4 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay