3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09150

Details:

PFam ID : PF09150

PFam Domain Description : Orange carotenoid protein, N-terminal

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 66

Average sequence length: 152.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09150	B4VSV7_9CYAN_5_162	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09150	B4VSV7_9CYAN_5_162	100

Sequence based PCA Plot of the family - PF09150 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=141 Length=8
Motif2 Start=71 Length=8
Motif3 Start=27 Length=11
Motif4 Start=103 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay