3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09148

Details:

PFam ID : PF09148

PFam Domain Description : Domain of unknown function (DUF1934)

Number of Sequence in 50% Dataset : 135

Number of Sequence in Full Dataset : 281

Average sequence length: 125.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09148	C7TMG5_LACRL_2_57	85.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09148	E0RZV0_BUTPB_5_142	100

Sequence based PCA Plot of the family - PF09148 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=1 Length=8
Motif3 Start=11 Length=8
Motif4 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay