3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09145

Details:

PFam ID : PF09145

PFam Domain Description : Ubiquitin-associated

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 8

Average sequence length: 39.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09145	A1TRM9_ACIAC_83_173	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09145	Q74Z54_ASHGO_119_160	100

Sequence based PCA Plot of the family - PF09145 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay