3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09142

Details:

PFam ID : PF09142

PFam Domain Description : tRNA Pseudouridine synthase II, C terminal

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 174

Average sequence length: 56.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09142	E6KPX8_9ACTO_277_356	60.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09142	D7CTQ9_TRURR_243_301	100

Sequence based PCA Plot of the family - PF09142 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay