3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09140

Details:

PFam ID : PF09140

PFam Domain Description : ATPase MipZ

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 184

Average sequence length: 180.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09140	A5CQ76_CLAM3_120_167	72.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09140	A4TXP3_9PROT_7_269	99.4

Sequence based PCA Plot of the family - PF09140 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=9 Length=8
Motif3 Start=139 Length=8
Motif4 Start=110 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay