3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09139

Details:

PFam ID : PF09139

PFam Domain Description : Mitochondrial matrix Mmp37

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 155

Average sequence length: 272.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09139	B6AH98_CRYMR_12_315	80.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09139	E7RAJ2_PICAD_133_519	100

Sequence based PCA Plot of the family - PF09139 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=200 Length=8
Motif2 Start=87 Length=8
Motif3 Start=48 Length=8
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay