3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09137

Details:

PFam ID : PF09137

PFam Domain Description : Glucodextranase, domain N

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 96

Average sequence length: 262.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09137	E0FU37_9THEO_39_163	89.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09137	B9LP03_HALLT_726_1023	100

Sequence based PCA Plot of the family - PF09137 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=254 Length=8
Motif2 Start=238 Length=8
Motif3 Start=1 Length=11
Motif4 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay