3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09135

Details:

PFam ID : PF09135

PFam Domain Description : Alb1

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 68

Average sequence length: 105.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09135	Q6CCR9_YARLI_7_129	46.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09135	Q758V9_ASHGO_7_124	76

Sequence based PCA Plot of the family - PF09135 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay