3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09129

Details:

PFam ID : PF09129

PFam Domain Description : Cholesterol oxidase, substrate-binding

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 24

Average sequence length: 268.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09129	A6GC03_9DELT_308_640	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09129	A6GC03_9DELT_308_640	100

Sequence based PCA Plot of the family - PF09129 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=72 Length=8
Motif2 Start=130 Length=8
Motif3 Start=42 Length=11
Motif4 Start=269 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay