3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09127

Details:

PFam ID : PF09127

PFam Domain Description : Leukotriene A4 hydrolase, C-terminal

Number of Sequence in 50% Dataset : 71

Number of Sequence in Full Dataset : 229

Average sequence length: 140.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09127	LKHA4_ASHGO_461_620	88.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09127	LKHA4_ASHGO_461_620	100

Sequence based PCA Plot of the family - PF09127 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=112 Length=8
Motif2 Start=145 Length=8
Motif3 Start=86 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay