3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09125

Details:

PFam ID : PF09125

PFam Domain Description : Cytochrome C oxidase subunit II, transmembrane

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 8

Average sequence length: 32.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09125	E5EPQ4_9CAUD_104_160	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09125	D7BH40_MEISD_2_36	100

Sequence based PCA Plot of the family - PF09125 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay