3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09118

Details:

PFam ID : PF09118

PFam Domain Description : Domain of unknown function (DUF1929)

Number of Sequence in 50% Dataset : 60

Number of Sequence in Full Dataset : 312

Average sequence length: 99.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09118	A9SSL1_PHYPA_290_434	86.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09118	A8J2L1_CHLRE_490_616	100

Sequence based PCA Plot of the family - PF09118 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=118 Length=8
Motif3 Start=59 Length=11
Motif4 Start=104 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay