3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09115

Details:

PFam ID : PF09115

PFam Domain Description : DNA polymerase III, delta subunit, C terminal

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 143

Average sequence length: 116.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09115	D8PH88_9BACT_214_333	43.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09115	D4G8I8_RIEPU_207_327	100

Sequence based PCA Plot of the family - PF09115 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=14 Length=8
Motif2 Start=5 Length=8
Motif3 Start=103 Length=8
Motif4 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay