3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09110

Details:

PFam ID : PF09110

PFam Domain Description : HAND

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 110

Average sequence length: 100.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09110	A9US76_MONBE_639_699	42.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09110	Q6CIQ3_KLULA_707_844	100

Sequence based PCA Plot of the family - PF09110 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=117 Length=11
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay