3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09106

Details:

PFam ID : PF09106

PFam Domain Description : Elongation factor SelB, winged helix

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 228

Average sequence length: 57.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09106	B5YHA3_THEYD_441_478	90.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09106	D6V0Q5_9BRAD_442_499	100

Sequence based PCA Plot of the family - PF09106 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=40 Length=8
Motif2 Start=31 Length=8
Motif3 Start=22 Length=8
Motif4 Start=8 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay