3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09103

Details:

PFam ID : PF09103

PFam Domain Description : BRCA2, oligonucleotide/oligosaccharide-binding, domain 1

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 83

Average sequence length: 120.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09103	B6KFU6_TOXGO_1579_1701	92.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09103	F0ZBE1_DICPU_792_971	100

Sequence based PCA Plot of the family - PF09103 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=14 Length=8
Motif2 Start=106 Length=8
Motif3 Start=3 Length=8
Motif4 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay