3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09098

Details:

PFam ID : PF09098

PFam Domain Description : Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 21

Average sequence length: 61.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09098	F0G341_9BURK_1_39	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09098	Q8VUT0_PARDE_120_187	100

Sequence based PCA Plot of the family - PF09098 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=8
Motif2 Start=1 Length=8
Motif3 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay