3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09095

Details:

PFam ID : PF09095

PFam Domain Description : Domain of unknown function (DUF1926)

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 74

Average sequence length: 235.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09095	C8PSH3_9SPIO_223_292	82

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09095	D6TNV7_9CHLR_415_732	100

Sequence based PCA Plot of the family - PF09095 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=229 Length=11
Motif3 Start=49 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay