3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09093

Details:

PFam ID : PF09093

PFam Domain Description : Lyase, catalytic

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 51

Average sequence length: 330.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09093	A7SZS3_NEMVE_145_446	94.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09093	C0AWN4_9ENTR_1_30	100

Sequence based PCA Plot of the family - PF09093 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=57 Length=8
Motif3 Start=248 Length=8
Motif4 Start=183 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay