3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09092

Details:

PFam ID : PF09092

PFam Domain Description : Lyase, N terminal

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 54

Average sequence length: 164.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09092	A7SG47_NEMVE_173_348	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09092	D4F1N1_EDWTA_33_230	100

Sequence based PCA Plot of the family - PF09092 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=37 Length=8
Motif3 Start=75 Length=8
Motif4 Start=112 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay